, including all inherited members.
| actorTree() const | vlMolecule::Molecule | [inline] |
| actorTree() | vlMolecule::Molecule | [inline] |
| addAtom(Atom *atom) | vlMolecule::Molecule | |
| addBond(Bond *bond) | vlMolecule::Molecule | |
| addBond(Atom *a1, Atom *a2) | vlMolecule::Molecule | |
| aromaticRingColor() const | vlMolecule::Molecule | [inline] |
| as() | vl::Object | [inline] |
| as() const | vl::Object | [inline] |
| atom(int index) const | vlMolecule::Molecule | |
| atomCount() const | vlMolecule::Molecule | [inline] |
| atomDetail() const | vlMolecule::Molecule | [inline] |
| atomLabelEffect() const | vlMolecule::Molecule | [inline] |
| atomLabelEffect() | vlMolecule::Molecule | [inline] |
| atomLabelTemplate() | vlMolecule::Molecule | [inline] |
| atomLabelTemplate() const | vlMolecule::Molecule | [inline] |
| atoms() const | vlMolecule::Molecule | [inline] |
| atoms() | vlMolecule::Molecule | [inline] |
| atomsStyle() | vlMolecule::Molecule | [protected] |
| automaticDelete() const | vl::Object | [inline] |
| ballAndStickStyle() | vlMolecule::Molecule | [protected] |
| bond(int index) const | vlMolecule::Molecule | |
| bond(Atom *a1, Atom *a2) | vlMolecule::Molecule | |
| bondCount() const | vlMolecule::Molecule | [inline] |
| bondDetail() const | vlMolecule::Molecule | [inline] |
| bonds() const | vlMolecule::Molecule | [inline] |
| bonds() | vlMolecule::Molecule | [inline] |
| className() | vl::Object | [inline, virtual] |
| computeAtomAdjacency() | vlMolecule::Molecule | |
| cycle(int i) const | vlMolecule::Molecule | [inline] |
| cycle(int i) | vlMolecule::Molecule | [inline] |
| cycles() const | vlMolecule::Molecule | [inline] |
| cycles() | vlMolecule::Molecule | [inline] |
| decReference() | vl::Object | [inline] |
| eraseAllAtoms() | vlMolecule::Molecule | |
| eraseAllBonds() | vlMolecule::Molecule | |
| eraseAtom(Atom *atom) | vlMolecule::Molecule | |
| eraseAtom(int index) | vlMolecule::Molecule | |
| eraseBond(Bond *bond) | vlMolecule::Molecule | |
| eraseBond(int bond) | vlMolecule::Molecule | |
| eraseBond(Atom *a1, Atom *a2) | vlMolecule::Molecule | |
| eraseBond(int a1, int a2) | vlMolecule::Molecule | |
| generateAtomLabel(const Atom *atom, vl::Transform *tr) | vlMolecule::Molecule | [protected] |
| generateAtomLabels() | vlMolecule::Molecule | [protected] |
| generateRings() | vlMolecule::Molecule | [protected] |
| id() const | vlMolecule::Molecule | [inline] |
| incidentBonds(std::vector< Bond * > &inc_bonds, Atom *atom) | vlMolecule::Molecule | |
| incReference() | vl::Object | [inline] |
| lineWidth() const | vlMolecule::Molecule | [inline] |
| mActorTree | vlMolecule::Molecule | [protected] |
| mAromaticRingColor | vlMolecule::Molecule | [protected] |
| mAtomDetail | vlMolecule::Molecule | [protected] |
| mAtomLabelEffect | vlMolecule::Molecule | [protected] |
| mAtomLabelTemplate | vlMolecule::Molecule | [protected] |
| mAtoms | vlMolecule::Molecule | [protected] |
| mBondDetail | vlMolecule::Molecule | [protected] |
| mBonds | vlMolecule::Molecule | [protected] |
| mCycles | vlMolecule::Molecule | [protected] |
| mId | vlMolecule::Molecule | [protected] |
| mLineWidth | vlMolecule::Molecule | [protected] |
| mMoleculeName | vlMolecule::Molecule | [protected] |
| mMoleculeStyle | vlMolecule::Molecule | [protected] |
| mName | vl::Object | [protected] |
| Molecule() | vlMolecule::Molecule | |
| Molecule(const Molecule &other) | vlMolecule::Molecule | [inline] |
| moleculeName() const | vlMolecule::Molecule | [inline] |
| moleculeStyle() const | vlMolecule::Molecule | [inline] |
| mRingOffset | vlMolecule::Molecule | [protected] |
| mShowAtomNames | vlMolecule::Molecule | [protected] |
| mSmoothLines | vlMolecule::Molecule | [protected] |
| mTags | vlMolecule::Molecule | [protected] |
| mTransformTree | vlMolecule::Molecule | [protected] |
| name() const | vl::Object | [inline] |
| Object() | vl::Object | [inline] |
| Object(const Object &other) | vl::Object | [inline] |
| operator=(const Molecule &other) | vlMolecule::Molecule | |
| vl::Object::operator=(const Object &other) | vl::Object | [inline] |
| prepareAtomInsert(int bonus=100) | vlMolecule::Molecule | [inline, protected] |
| prepareBondInsert(int bonus=100) | vlMolecule::Molecule | [inline, protected] |
| prepareForRendering() | vlMolecule::Molecule | |
| referenceCount() const | vl::Object | [inline] |
| reset() | vlMolecule::Molecule | |
| ringOffset() const | vlMolecule::Molecule | [inline] |
| setAromaticBondsColor(const vl::fvec4 &color) | vlMolecule::Molecule | |
| setAromaticRingColor(const vl::fvec4 &color) | vlMolecule::Molecule | [inline] |
| setAtomColors(const vl::fvec4 &color) | vlMolecule::Molecule | |
| setAtomDetail(int detail) | vlMolecule::Molecule | [inline] |
| setAtomRadii(float radius) | vlMolecule::Molecule | |
| setAtomTypeVisible(EAtomType type, bool visible) | vlMolecule::Molecule | |
| setAutomaticDelete(bool autodel_on) | vl::Object | [inline] |
| setBondDetail(int detail) | vlMolecule::Molecule | [inline] |
| setBondRadii(float radius) | vlMolecule::Molecule | |
| setCalculatedAtomRadii(float percentage=1.0f) | vlMolecule::Molecule | |
| setCovalentAtomRadii(float percentage=1.0f) | vlMolecule::Molecule | |
| setCPKAtomColors() | vlMolecule::Molecule | |
| setEmpiricalAtomRadii(float percentage=1.0f) | vlMolecule::Molecule | |
| setId(unsigned int id) | vlMolecule::Molecule | [inline] |
| setLineWidth(float w) | vlMolecule::Molecule | [inline] |
| setMoleculeName(const std::string &name) | vlMolecule::Molecule | [inline] |
| setMoleculeStyle(EMoleculeStyle style) | vlMolecule::Molecule | [inline] |
| setName(const std::string &name) | vl::Object | [inline] |
| setRingOffset(float offset) | vlMolecule::Molecule | [inline] |
| setShowAtomNames(bool show) | vlMolecule::Molecule | [inline] |
| setSmoothLines(bool smooth) | vlMolecule::Molecule | [inline] |
| setVanDerWaalsAtomRadii(float percentage=1.0f) | vlMolecule::Molecule | |
| showAtomNames() const | vlMolecule::Molecule | [inline] |
| smoothLines() const | vlMolecule::Molecule | [inline] |
| sticksStyle() | vlMolecule::Molecule | [protected] |
| tags() | vlMolecule::Molecule | [inline] |
| tags() const | vlMolecule::Molecule | [inline] |
| transformTree() | vlMolecule::Molecule | [inline] |
| transformTree() const | vlMolecule::Molecule | [inline] |
| wireframeStyle() | vlMolecule::Molecule | [protected] |
| ~Molecule() | vlMolecule::Molecule | [inline] |
| ~Object() | vl::Object | [protected, virtual] |