vlMolecule::Atom Class Reference

The Atom class represents an atom to be used with the Molecule class. More...

#include <Atom.hpp>

Inheritance diagram for vlMolecule::Atom:

List of all members.

Public Member Functions
	Atom ()
	Atom (const Atom &other)
Atom &	operator= (const Atom &other)
	Assignment operator: does not assign the adjacent atoms.
bool	isAtomAdjacent (Atom *atom) const
const std::vector< vl::ref < Atom > > &	adjacentAtoms () const
std::vector< vl::ref< Atom > > &	adjacentAtoms ()
EAtomType	atomType () const
void	setAtomType (EAtomType type)
unsigned int	id () const
void	setId (unsigned int id)
const vl::fvec3 &	coordinates () const
void	setCoordinates (const vl::fvec3 &coordinates)
float	radius () const
void	setRadius (float radius)
void	setVisited (bool visited)
bool	visited () const
void	setAtomName (const std::string &name)
const std::string &	atomName () const
const vl::fvec4 &	color () const
void	setColor (const vl::fvec4 &color)
bool	visible () const
void	setVisible (bool visible)
void	setShowAtomName (bool show)
	Defines whether the atom name should be rendered or not. See also Molecule::setShowAtomNames().
bool	showAtomName () const
	Defines whether the atom name should be rendered or not. See also Molecule::setShowAtomNames().
Protected Attributes
vl::fvec4	mColor
vl::fvec3	mCoordinates
EAtomType	mAtomType
float	mRadius
std::vector< vl::ref< Atom > >	mAdjacentAtoms
std::string	mAtomName
unsigned int	mId
bool	mVisited
bool	mVisible
bool	mShowAtomName

---

Detailed Description

The Atom class represents an atom to be used with the Molecule class.

See also:

• Molecule Visualization Tutorial
• Molecule
• Bond

---

Constructor & Destructor Documentation

vlMolecule::Atom::Atom

(

)

[inline]

vlMolecule::Atom::Atom

(

const Atom &

other

)

[inline]

---

Member Function Documentation

Atom& vlMolecule::Atom::operator=

(

const Atom &

other

)

[inline]

Assignment operator: does not assign the adjacent atoms.

bool vlMolecule::Atom::isAtomAdjacent

(

Atom *

atom

)

const [inline]

const std::vector< vl::ref<Atom> >& vlMolecule::Atom::adjacentAtoms

(

)

const [inline]

std::vector< vl::ref<Atom> >& vlMolecule::Atom::adjacentAtoms

(

)

[inline]

EAtomType vlMolecule::Atom::atomType

(

)

const [inline]

void vlMolecule::Atom::setAtomType

(

EAtomType

type

)

[inline]

unsigned int vlMolecule::Atom::id

(

)

const [inline]

void vlMolecule::Atom::setId

(

unsigned int

id

)

[inline]

const vl::fvec3& vlMolecule::Atom::coordinates

(

)

const [inline]

void vlMolecule::Atom::setCoordinates

(

const vl::fvec3 &

coordinates

)

[inline]

float vlMolecule::Atom::radius

(

)

const [inline]

void vlMolecule::Atom::setRadius

(

float

radius

)

[inline]

void vlMolecule::Atom::setVisited

(

bool

visited

)

[inline]

bool vlMolecule::Atom::visited

(

)

const [inline]

void vlMolecule::Atom::setAtomName

(

const std::string &

name

)

[inline]

const std::string& vlMolecule::Atom::atomName

(

)

const [inline]

const vl::fvec4& vlMolecule::Atom::color

(

)

const [inline]

void vlMolecule::Atom::setColor

(

const vl::fvec4 &

color

)

[inline]

bool vlMolecule::Atom::visible

(

)

const [inline]

void vlMolecule::Atom::setVisible

(

bool

visible

)

[inline]

void vlMolecule::Atom::setShowAtomName

(

bool

show

)

[inline]

Defines whether the atom name should be rendered or not. See also Molecule::setShowAtomNames().

bool vlMolecule::Atom::showAtomName

(

)

const [inline]

Defines whether the atom name should be rendered or not. See also Molecule::setShowAtomNames().

---

Member Data Documentation

vl::fvec4 vlMolecule::Atom::mColor [protected]

vl::fvec3 vlMolecule::Atom::mCoordinates [protected]

EAtomType vlMolecule::Atom::mAtomType [protected]

float vlMolecule::Atom::mRadius [protected]

std::vector< vl::ref<Atom> > vlMolecule::Atom::mAdjacentAtoms [protected]

std::string vlMolecule::Atom::mAtomName [protected]

unsigned int vlMolecule::Atom::mId [protected]

bool vlMolecule::Atom::mVisited [protected]

bool vlMolecule::Atom::mVisible [protected]

bool vlMolecule::Atom::mShowAtomName [protected]

---

The documentation for this class was generated from the following file:

• E:/VisualizationLibrary/BuildSystem/VL_DISTRO/Visualization_Library_SDK/src/vlMolecule/Atom.hpp